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SpatialEpi (version 1.1)
Performs various spatial epidemiological analyses
Description
Cluster Detection, Disease Mapping
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Install
install.packages('SpatialEpi')
Monthly Downloads
732
Version
1.1
License
GPL-2
Maintainer
Albert Kim
Last Published
January 5th, 2013
Functions in SpatialEpi (1.1)
Search functions
estimate.lambda
Internal Function to Estimate Lambda
LogNormalPriorCh
Compute Parameters to Calibrate a Log-normal Distribution
circle
Compute cartesian coordinates of a cluster center and radius
process.MCMC.chain
Process MCMC Chain
pennLC
Pennsylvania Lung Cancer
create.geo.objects
Create geographical objects to be used in
bayes.cluster
function.
expected
Compute Expected Numbers of Disease
ranking
Get rankings of non-overlapping elements
SpatialEpi-package
Methods for spatial epidemiology
latlong2grid
Convert Coordinates from Latitude/Longitude to Grid
normalize
Normalize a vector
estimate.q
Estimate q values for prior prob of j clusters/anti-clusters
plotmap
Plot Levels of a Variable in a Colour-Coded Map
MCMC
MCMC Wrapper Function
eBayes
Empirical Bayes Estimates of Relative Risk
grid2latlong
Convert Coordinates from Grid to Latitude/Longitude
bayes.cluster
Bayesian Cluster Detection
zones
Create Set of All Zones and Output Geographical Information
besag.newell
Besag-Newell Cluster Detection Method
polygon2spatial.polygon
Convert a Polygon to a Spatial Polygons Object
mapvariable
Plot Levels of a Variable in a Colour-Coded Map
NYleukemia
Upstate New York Leukemia Data
scotland
Lip Cancer in Scotland
GammaPriorCh
Compute Parameters to Calibrate a Gamma Distribution
kulldorff
Kulldorff Cluster Detection Method