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SpatialEpi (version 1.1)

Performs various spatial epidemiological analyses

Description

Cluster Detection, Disease Mapping

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Version

Install

install.packages('SpatialEpi')

Monthly Downloads

691

Version

1.1

License

GPL-2

Maintainer

Albert Kim

Last Published

January 5th, 2013

Functions in SpatialEpi (1.1)

estimate.lambda

Internal Function to Estimate Lambda

LogNormalPriorCh

Compute Parameters to Calibrate a Log-normal Distribution

circle

Compute cartesian coordinates of a cluster center and radius

process.MCMC.chain

Process MCMC Chain

pennLC

Pennsylvania Lung Cancer

create.geo.objects

Create geographical objects to be used in bayes.cluster function.

expected

Compute Expected Numbers of Disease

ranking

Get rankings of non-overlapping elements

SpatialEpi-package

Methods for spatial epidemiology

latlong2grid

Convert Coordinates from Latitude/Longitude to Grid

normalize

Normalize a vector

estimate.q

Estimate q values for prior prob of j clusters/anti-clusters

plotmap

Plot Levels of a Variable in a Colour-Coded Map

MCMC

MCMC Wrapper Function

eBayes

Empirical Bayes Estimates of Relative Risk

grid2latlong

Convert Coordinates from Grid to Latitude/Longitude

bayes.cluster

Bayesian Cluster Detection

zones

Create Set of All Zones and Output Geographical Information

besag.newell

Besag-Newell Cluster Detection Method

polygon2spatial.polygon

Convert a Polygon to a Spatial Polygons Object

mapvariable

Plot Levels of a Variable in a Colour-Coded Map

NYleukemia

Upstate New York Leukemia Data

scotland

Lip Cancer in Scotland

GammaPriorCh

Compute Parameters to Calibrate a Gamma Distribution

kulldorff

Kulldorff Cluster Detection Method