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SpatialEpi (version 1.1)

Performs various spatial epidemiological analyses

Description

Cluster Detection, Disease Mapping

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Version

Install

install.packages('SpatialEpi')

Monthly Downloads

691

Version

1.1

License

GPL-2

Maintainer

Albert Kim

Last Published

January 5th, 2013

Functions in SpatialEpi (1.1)

estimate.lambda

Internal Function to Estimate Lambda
LogNormalPriorCh

Compute Parameters to Calibrate a Log-normal Distribution
circle

Compute cartesian coordinates of a cluster center and radius
process.MCMC.chain

Process MCMC Chain
pennLC

Pennsylvania Lung Cancer
create.geo.objects

Create geographical objects to be used in bayes.cluster function.
expected

Compute Expected Numbers of Disease
ranking

Get rankings of non-overlapping elements
SpatialEpi-package

Methods for spatial epidemiology
latlong2grid

Convert Coordinates from Latitude/Longitude to Grid
normalize

Normalize a vector
estimate.q

Estimate q values for prior prob of j clusters/anti-clusters
plotmap

Plot Levels of a Variable in a Colour-Coded Map
MCMC

MCMC Wrapper Function
eBayes

Empirical Bayes Estimates of Relative Risk
grid2latlong

Convert Coordinates from Grid to Latitude/Longitude
bayes.cluster

Bayesian Cluster Detection
zones

Create Set of All Zones and Output Geographical Information
besag.newell

Besag-Newell Cluster Detection Method
polygon2spatial.polygon

Convert a Polygon to a Spatial Polygons Object
mapvariable

Plot Levels of a Variable in a Colour-Coded Map
NYleukemia

Upstate New York Leukemia Data
scotland

Lip Cancer in Scotland
GammaPriorCh

Compute Parameters to Calibrate a Gamma Distribution
kulldorff

Kulldorff Cluster Detection Method