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SpatialVS (version 1.1)

Spatial Variable Selection

Description

Perform variable selection for the spatial Poisson regression model under the adaptive elastic net penalty. Spatial count data with covariates is the input. We use a spatial Poisson regression model to link the spatial counts and covariates. For maximization of the likelihood under adaptive elastic net penalty, we implemented the penalized quasi-likelihood (PQL) and the approximate penalized loglikelihood (APL) methods. The proposed methods can automatically select important covariates, while adjusting for possible spatial correlations among the responses. More details are available in Xie et al. (2018, ). The package also contains the Lyme disease dataset, which consists of the disease case data from 2006 to 2011, and demographic data and land cover data in Virginia. The Lyme disease case data were collected by the Virginia Department of Health. The demographic data (e.g., population density, median income, and average age) are from the 2010 census. Land cover data were obtained from the Multi-Resolution Land Cover Consortium for 2006.

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Version

Install

install.packages('SpatialVS')

Monthly Downloads

144

Version

1.1

License

GPL-2

Maintainer

Yili Hong

Last Published

November 10th, 2018

Functions in SpatialVS (1.1)

lyme.svs.eco1.dat

The Lyme disease dataset with Eco id=1
small.test.dat

A small dataset for fast testing of functions
control.default

Global variable of spatial variable selection, contains optimization tuning parameters.
SpatialVS

Function for spatial variable selection
SpatialVS.summary

Function for spatial variable selection's summary
lyme.svs.eco0.dat

The Lyme disease dataset with Eco id=0