SpatialVx (version 0.3)

waverify2d: High-Resolution Gridded Forecast Verification Using Discrete Wavelet Decomposition

Description

High-resolution gridded forecast verification using discrete wavelet decomposition.

Usage

waverify2d(X, ..., Clim = NULL, wavelet.type = "haar", J = NULL)
## S3 method for class 'default':
waverify2d(X, ..., Y, Clim = NULL, wavelet.type = "haar", J =
                 NULL, useLL = FALSE, compute.shannon = FALSE,
                 which.space = "field", verbose = FALSE)
## S3 method for class 'SpatialVx':
waverify2d(X, ..., Clim = NULL, wavelet.type = "haar", J = NULL, 
    useLL = FALSE, compute.shannon = FALSE, which.space = "field", 
    time.point = 1, model = 1, verbose = FALSE)
mowaverify2d(X, ..., Clim = NULL, wavelet.type = "haar", J = 4)
## S3 method for class 'default':
mowaverify2d(X, ..., Clim = NULL, Y, wavelet.type = "haar", J = 4,
    useLL = FALSE, compute.shannon = FALSE, which.space = "field", verbose = FALSE)
## S3 method for class 'SpatialVx':
mowaverify2d(X, ..., Clim = NULL, wavelet.type = "haar", J = 4, 
    useLL = FALSE, compute.shannon = FALSE, which.space = "field", 
    time.point = 1, model = 1, verbose = FALSE)
## S3 method for class 'waverify2d':
plot(x, ..., main1 = "X", main2 = "Y", main3 = "Climate", 
    which.plots = c("all", "dwt2d", "details", "energy", "mse", 
        "rmse", "acc"), separate = FALSE, col, horizontal = TRUE)
## S3 method for class 'waverify2d':
print(x, ...)

Arguments

X,Y,Clim

m by n dyadic matrices (i.e., m = 2^M and n = 2^N, for M, N some integers) giving the verification and forecast fields (and optionally a climatology field), resp. Alternatively, X may be a SpatialVx object, in which case,

x

list object of class waverify2d as returned by waverify2d.

wavelet.type

character naming the type of wavelet to be used. This is given as the wf argument to the dwt.2d function of package waveslim.

J

(optional) numeric integer giving the pre-determined number of levels to use. If NULL, J is set to be log2(m) = M in waverify2d only.

useLL

logical, should the LL submatrix (i.e., the father wavelet or grand mean) be used to find the inverse DWT's for calculating the detail fields?

compute.shannon

logical, should the Shannon entropy be calculated for the wavelet decomposition?

which.space

character (one of field or wavelet) naming from which space the detail fields should be used. If field, then it is in the original field (or image) space (i.e., the detail reconstruction), and if

time.point

numeric or character indicating which time point from the SpatialVx verification set to select for analysis.

model

numeric indicating which forecast model to select for the analysis.

main1,main2,main3

optional characters naming each field to be used for the detail field plots and legend labelling on the energy plot.

which.plots

character vector describing which plots to make. The default is to make all of them. dwt2d option uses plot.dwt2d from waveslim. details option makes image plots of the detail fields on which th

separate

logical, should the plots be on their own devices (TRUE) or should some of them be put onto a single multi-panel device (FALSE, default)?

col

optional argument specifying the col argument in calls to functions like image. Default is a concatenation of gray with time.colors(64).

horizontal

logical, should the legend on image plots be horizontal (TRUE, placed at the bottom of the plot) or vertical (FALSE, placed at the right side of the plot)?

verbose

logical, should progress information be printed to the screen, including total run time?

...

optional additonal plot or image.plot parameters. If detail and energy, mse, rmse or acc plots are desired, must be applicable to both types of plots. Not used by print method function.

Value

• A list object of class waverify2d with components:
• J
  single numeric giving the number of levels.
• X.wave, Y.wave, Clim.wave
  objects of class dwt.2d describing the wavelet decompositions for the verification and forecast fields (and climatology, if applicable), resp. (see the help file for dwt.2d from package waveslim for more about these objects).
• Shannon.entropy
  numeric matrix giving the Shannon entropy for each field.
• energy
  numeric matrix giving the energy at each level and field.
• mse,rmse
  numeric vectors of length J giving the MSE/RMSE for each level between the verification and forecast fields.
• acc
  If a climatology field is supplied, this is a numeric vector giving the ACC for each level.

Details

This is a function to use discrete wavelet decomposition to analyze verification sets along the lines of Briggs and Levine (1997), as well as Casati et al. (2004) and Casati (2009). In the originally proposed formulation of Briggs and Levine (1997), continuous verification statistics (namely, the anomaly correlation coefficient (ACC) and root mean square error (RMSE)) are calculated for detail fields obtained from wavelet decompositions of each of a forecast and verification field (and for ACC a climatology field as well). Casati et al. (2004) introduced an intensity scale approach that applies 2-d DWT to binary (obtained from thresholding) difference fields (Forecast - Verification), and applying a skill score at each level based on the mean square error (MSE). Casati (2009) extended this idea to look at the energy at each level as well.

This function makes use of the dwt.2d and idwt.2d functions from package waveslim, and plot.waverify2d uses the plot.dwt.2d function if dwt2d is selected through the which.plots argument. See the help file for these functions, the references therein and the references herein for more on these approaches.

Generally, it is not necessary to use the father wavelet for the detail fields, but for some purposes, it may be desired.

mowaverify2d is very similar to waverify2d, but it allows fields to be non-dyadic (and may subsequently be slower). It uses the modwt.2d and imodwt.2d functions from the package waveslim. In particular, it performs a maximal overlap discrete wavelet transform on a matrix of arbitrary dimension. See the help file and references therein for modwt.2d for more information, as well as Percival and Guttorp (1994) and Lindsay et al. (1996).

In Briggs and Levine (1997), they state that the calculations can be done in either the data (called field here) space or the wavelet space, and they do their examples in the field space. If the wavelets are orthogonal, then the detail coefficeints (wavelet space), can be analyzed with the assumption that they are independent; whereas in the data space, they typically cannot be assumed to be independent. Therefore, most statistical tests should be performed in the wavelet space to avoid issues arising from spatial dependence.

References

Briggs, W. M. and Levine, R. A. (1997) Wavelets and field forecast verification. Mon. Wea. Rev., 125, 1329--1341.

Casati, B., Ross, G. and Stephenson, D. B. (2004) A new intensity-scale approach for the verification of spatial precipitation forecasts. Meteorol. Appl. 11, 141--154.

Casati, B. (2010) New Developments of the Intensity-Scale Technique within the Spatial Verification Methods Inter-Comparison Project. Wea. Forecasting 25, (1), 113--143, doi:10.1175/2009WAF2222257.1.

Lindsay, R. W., Percival, D. B. and Rothrock, D. A. (1996) The discrete wavelet transform and the scale analysis of the surface properties of sea ice. IEEE Transactions on Geoscience and Remote Sensing, 34 (3), 771--787.

Percival, D. B. and Guttorp, P. (1994) Long-memory processes, the Allan variance and wavelets. In Wavelets in Geophysics, Foufoula-Georgiou, E. and Kumar, P., Eds., New York: Academic, pp. 325--343.

See Also

dwt.2d, idwt.2d, hoods2d

Examples

grid<- list( x= seq( 0,5,,64), y= seq(0,5,,64))
obj<-Exp.image.cov( grid=grid, theta=.5, setup=TRUE)
look<- sim.rf( obj) 
look[ look < 0] <- 0
look <- zapsmall( look)

look2 <- sim.rf( obj) 
look2[ look2 < 0] <- 0 
look2 <- zapsmall( look2)

res <- waverify2d(look, Y=look2)
plot(res)
summary(res)

data(UKobs6)
data(UKfcst6)
look <- waverify2d(UKobs6, Y=UKfcst6)
plot(look, which.plots="energy")
look2 <- mowaverify2d(UKobs6, UKfcst6, J=8)
plot(look2, which.plots="energy")

pdf("dyadicDWTex.pdf")
plot(look, main1="NIMROD Analysis", main2="NIMROD Forecast")
dev.off()

pdf("nondyadicMODWTex.pdf")
plot(look2, main1="NIMROD Analysis", main2="NIMROD Forecast")
dev.off()

# Alternative using "SpatialVx" object.
data(UKloc)
hold <- make.SpatialVx(UKobs6, UKfcst6, loc=UKloc,
    map=TRUE, field.type="Rainfall", units="mm/h",
    data.name=c("Nimrod", "Obs 6", "Fcst 6"))
look <- waverify2d(hold)

plot(look, which.plots="details")

data(pert000)
data(pert004)

# The following is slow, but does not require fields to be dyadic.
look <- mowaverify2d(pert000, Y=pert004, J=8, verbose=TRUE)

# Also can just do plot(look), but should print to a pdf file (e.g., using pdf()).
plot(look, which.plots="energy")

# Using a "SpatialVx" object.
data(ICPg240Locs)
hold <- make.SpatialVx(pert000, pert004, loc=ICPg240Locs,
    projection=TRUE, map=TRUE, loc.byrow = TRUE,
    field.type="Precipitation", units="mm/h",
    data.name=c("ICP Perturbed Cases", "pert000", "pert004"))

look <- mowaverify2d(hold, verbose=TRUE)

plot(look, which.plots="details")

# Try one with some kind of climatology field.  Here using surrogater2d function.
hold <- surrogater2d(UKobs6, n=1, maxiter=50, verbose=TRUE)
hold <- matrix(hold, 256, 256)
image(hold, col=c("grey",tim.colors(64)), axes=FALSE)
image.plot(UKloc, col=c("grey",tim.colors(64)), legend.only=TRUE, horizontal=TRUE)

look <- waverify2d(UKobs6, Y=UKfcst6, Clim=hold)
pdf("waveletEx.pdf")
plot(look)
dev.off()