SpeCond (version 1.26.0)

writeSpeCondResult: Write in text files the main result of the SpeCond function

Description

writeSpeCondResult produces three text files: - The table of the gene detected as specific and in which condition they are specific (0: no specific, 1: specific up-regulated, -1:specific down-regulated). The default name is file.name.profile="specific_profile.txt". - The list of the specific genes. The default name is: "list_specific_probeset.txt". - The table of the unique specific profiles detected. The default name is: "specific_unique_profile.txt".

Usage

writeSpeCondResult(L.specific.result, file.name.profile = "specific_profile.txt", file.specific.gene = "list_specific_gene.txt",  file.name.unique.profile = "specific_unique_profile.txt")

Arguments

L.specific.result

The L.specific.result list of the included in the result of the main SpeCond function: generalResult$specificResult$L.specific.result

file.name.profile

The name of the produced file containing the gene's profiles

file.specific.gene

The name of the produced file containing the list of the specific genes

file.name.unique.profile

The name of the produced file containing the unique gene's profiles

See Also

SpeCond, getProfile, writeUniqueProfileSpecifcResult, writeGeneResult

Examples

library(SpeCond)
data(expressionSpeCondExample)
##Perform the condition specific detection analysis with SpeCond()
generalResult=SpeCond(expressionSpeCondExample, param.detection=NULL, 
 multitest.correction.method="BY", prefix.file="E", print.hist.pv=TRUE, fit1=NULL, 
 fit2=NULL, specificOutlierStep1=NULL)
 specificResult=generalResult$specificResult

##write the SpeCond results files
 writeSpeCondResult(specificResult$L.specific.result,file.name.profile=
 "Example_specific_profile.txt", file.specific.gene="Example_list_specific_gene.txt",
  file.name.unique.profile="Example_specific_unique_profile.txt")