umap

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umap: A umap function for similarity matrices or ordinary data

umap: A umap function for similarity matrices or ordinary data

Usage
umap(mydata, labels = FALSE, dotsize = 3, similarity = TRUE,
  axistextsize = 18, legendtextsize = 18)
Arguments
mydata

Data frame or matrix: kernel matrix or data frame with samples as columns, features as rows

labels

Factor: to label the plot with colours

dotsize

Numerical value: dot size

similarity

Logical flag: whether input is similarity matrix or not

axistextsize

Numerical value: axis text size

legendtextsize

Numerical value: legend text size

Value

A umap plot object

Aliases
  • umap
Examples
# NOT RUN {
ex_umap <- umap(blobs[,1:50],similarity=FALSE)
# }
Documentation reproduced from package Spectrum, version 0.2, License: AGPL-3

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