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Spectrum (version 0.7)

Fast Adaptive Spectral Clustering for Single and Multi-View Data

Description

A self-tuning spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens local connections in the graph. It uses a tensor product graph data integration and diffusion procedure to integrate different data sources and reduce noise. 'Spectrum' uses either the eigengap or multimodality gap heuristics to determine the number of clusters. The method is sufficiently flexible so that a wide range of Gaussian and non-Gaussian structures can be clustered with automatic selection of K.

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Version

Install

install.packages('Spectrum')

Monthly Downloads

322

Version

0.7

License

AGPL-3

Maintainer

Christopher John

Last Published

July 29th, 2019

Functions in Spectrum (0.7)

tsne

tsne: A tsne function for similarity matrices or ordinary data
umap

umap: A umap function for similarity matrices or ordinary data
kernel_pca

kernel_pca: A kernel pca function
circles

Three concentric circles
pca

pca: A pca function
rbfkernel_b

rbfkernel_b: fast self-tuning kernel
brain

A brain cancer dataset
blobs

8 blob like structures
CNN_kernel_mine_b

CNN_kernel_mine_b: fast adaptive density aware kernel
spirals

Two spirals wrapped around one another
Spectrum

Spectrum: Fast Adaptive Spectral Clustering for Single and Multi-view Data