SpidermiRanalyze_Community_detection

SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet

data

with the parameter type the user can choose the algorithm  to calculate the community structure
EB edge.betweenness.community
FC fastgreedy.community
WC walktrap.community
SC spinglass.community
LE leading.eigenvector.community
LP label.propagation.community

type


SpidermiRanalyze_Community_detection try to find dense subgraphs in directed or undirected graphs, by optimizing some criteria.


The aims of SpidermiR are : i) facilitate the network open-access
data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature,
iii) integration of miRNA data in a specific network, iv) provide different
standard analyses and v) allow the user to visualize the results. In more
detail, the package provides multiple methods for query, prepare and download
network data (GeneMania), and the integration with  validated and predicted miRNA data (mirWalk, miR2Disease,miRTar, miRandola,Pharmaco-miR,DIANA, Miranda, PicTar and TargetScan) and the use of standard
analysis (igraph) and visualization methods (networkD3).

SpidermiRanalyze_Community_detection: Find community detection

Description

Usage

Arguments

Value

Examples