SpidermiRanalyze_mirna_extra_cir

SpidermiRanalyze_mirna_gene_complnet output or network with miRNA in the first column of the dataframe

data

The user using the following parameteres can specify the network type
<table><tr><td>
mT </td>
</tr><tr><td>   to obtain a microRNA target interactions </td>
</tr><tr><td>
mCT  </td>
</tr><tr><td>   to obtain a microRNA target gene complete iteractions</td>
</tr></table>

type


SpidermiRanalyze_mirna_extra_cir creates a data frame with miRNA target or miRNA target gene interaction.


The aims of SpidermiR are : i) facilitate the network open-access
data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature,
iii) integration of miRNA data in a specific network, iv) provide different
standard analyses and v) allow the user to visualize the results. In more
detail, the package provides multiple methods for query, prepare and download
network data (GeneMania), and the integration with  validated and predicted miRNA data (mirWalk, miR2Disease,miRTar, miRandola,Pharmaco-miR,DIANA, Miranda, PicTar and TargetScan) and the use of standard
analysis (igraph) and visualization methods (networkD3).

SpidermiRanalyze_mirna_extra_cir: Integration of Extracellular/Circulating miRNA

Description

Usage

Arguments

Value

Examples