SpidermiR (version 1.1.8)

SpidermiRanalyze_mirna_gene_complnet: Integration of microRNA target gene networks.

Description

SpidermiRanalyze_mirna_gene_complnet creates a data frame with miRNA target gene interaction. The user can filter the search by disease.

Usage

SpidermiRanalyze_mirna_gene_complnet(data, miR_trg, mirna_t = NULL, disease = NULL)

Arguments

data

SpidermiRprepare_NET output

miR_trg

a parameter to indicate miRNA target database used. The user can use: 1) validated database (val) or 2) predicted database (pred)

mirna_t

a list given by the user with miRNA list of interest

disease

miRNA target gene interaction can be filtered by disease using the parameters obatined from SpidermiRquery_disease

Value

dataframe with miRNA target gene interaction data

Examples

GS_net <- data.frame(gA=c('SMAD','MYC'),gB=c('FOXM1','KRAS'),stringsAsFactors=FALSE)
miRNA_cNT<-SpidermiRanalyze_mirna_gene_complnet(data=GS_net,disease="prostate cancer",miR_trg="val")