SpidermiRanalyze_mirna_network

data

a parameter to indicate miRNA target database used. The user can use: 1) validated database (val) or 2) predicted database (pred)

miR_trg

a list given by the user with miRNA list of interest

mirna_t

miRNA gene interaction can be filtered by disease using the parameters obatined from SpidermiRquery_disease

disease


SpidermiRanalyze_mirna_network creates a data frame with miRNA gene interaction. The user can filter the search by disease.


The aims of SpidermiR are : i) facilitate the network open-access
data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature,
iii) integration of miRNA data in a specific network, iv) provide different
standard analyses and v) allow the user to visualize the results. In more
detail, the package provides multiple methods for query, prepare and download
network data (GeneMania), and the integration with  validated and predicted miRNA data (mirWalk, miR2Disease,miRTar, miRandola,Pharmaco-miR,DIANA, Miranda, PicTar and TargetScan) and the use of standard
analysis (igraph) and visualization methods (networkD3).

SpidermiRanalyze_mirna_network: Integration of microRNA target networks.

Description

Usage

Arguments

Value

Examples