SpidermiR (version 1.1.8)

SpidermiRanalyze_mirnanet_pharm: Integration of pharmacomiR in the network

Description

SpidermiRanalyze_mirnanet_pharm integrates both miRNA targeting of the gene and the gene-drug interaction from PharmacomiR database in the network

Usage

SpidermiRanalyze_mirnanet_pharm(mir_ph, net)

Arguments

mir_ph

SpidermiRdownload_pharmacomir output

net

a network data (e.g. SpidermiRanalyze_mirna_network or SpidermiRanalyze_mirna_gene_complnet output)

Value

a dataframe with the integation of network and pharmacomiR data

Examples

mir_p <-data.frame(gA=c('hsa-let-7a','CASP3'),gB=c('CASP3','paclitaxel'),stringsAsFactors=FALSE)
net_p <-data.frame(gA=c('hsa-let-7a','hsa-miR-300'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
mol<-SpidermiRanalyze_mirnanet_pharm(mir_ph=mir_p,net=net_p)