SpidermiRquery_spec_networks

describes index of a specific specie obtained by SpidermiRquery_species output

organismID

The network type the user is interested in.
Example:
<table><tr><td>
COexp </td>
</tr><tr><td>   Co-expression </td>
</tr><tr><td>
PHint  </td>
</tr><tr><td>   Physical_interactions </td>
</tr><tr><td>
COloc  </td>
</tr><tr><td>   Co-localization </td>
</tr><tr><td>
GENint  </td>
</tr><tr><td>   Genetic_interactions </td>
</tr><tr><td>
PATH  </td>
</tr><tr><td>   Pathway </td>
</tr><tr><td>
SHpd  </td>
</tr><tr><td>   Shared_protein_domains </td>
</tr></table>

network


The user can visualize the database or reference where the information came from


The aims of SpidermiR are : i) facilitate the network open-access
data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature,
iii) integration of miRNA data in a specific network, iv) provide different
standard analyses and v) allow the user to visualize the results. In more
detail, the package provides multiple methods for query, prepare and download
network data (GeneMania), and the integration with  validated and predicted miRNA data (mirWalk, miR2Disease,miRTar, miRandola,Pharmaco-miR,DIANA, Miranda, PicTar and TargetScan) and the use of standard
analysis (igraph) and visualization methods (networkD3).

SpidermiRquery_spec_networks: Searching by network categories

Description

Usage

Arguments

Value

Examples