SpidermiRvisualize_3Dbarplot

Edges_1net

Edges_2net

Edges_3net

Edges_4net

Edges_5net

NODES_1net

NODES_2net

NODES_3net

NODES_4net

NODES_5net

nmiRNAs_1net

nmiRNAs_2net

nmiRNAs_3net

nmiRNAs_4net

nmiRNAs_5net


It shows a barplot of 5 networks given by the user with a summary representation of number of nodes, edges, and miRNAs (log values)


The aims of SpidermiR are : i) facilitate the network open-access
data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature,
iii) integration of miRNA data in a specific network, iv) provide different
standard analyses and v) allow the user to visualize the results. In more
detail, the package provides multiple methods for query, prepare and download
network data (GeneMania), and the integration with  validated and predicted miRNA data (mirWalk, miR2Disease,miRTar, miRandola,Pharmaco-miR,DIANA, Miranda, PicTar and TargetScan) and the use of standard
analysis (igraph) and visualization methods (networkD3).

Claudia Cava

SpidermiR

SpidermiR: An R/Bioconductor package for integrative network analysis
with miRNA data

SpidermiRvisualize_3Dbarplot function

plots the 3D barplot

SpidermiRvisualize_3Dbarplot: plots the 3D barplot

Description

Usage

Arguments

Value

Examples