The values to the pulsar.params/icov.select.params argument in the spiec.easi function must be a list with values from pulsar and/or batch.pulsar. See the pulsar docs for detailed instructions.
List of arguments, data type, default. Description
thresh, numeric, 0.05. Threshold for StARS criterion.
subsample.ratio, numeric, 0.8. Subsample size for StARS.
rep.num, numeric, 20. Number of subsamples for StARS.
seed, numeric, NULL. Set the random seed for subsample set.
ncores, numeric, 1. Number of cores for parallel.
With pulsar.select='batch', additional arguments:
wkdir, dir path, current directory. Working directory for process running jobs.
regdir, dir path, temp directory. Directory for storing the registry files.
init, string, 'init'. String for differentiating the init registry for batch mode pulsar.
conffile, string / file path, ''. Path to config file or string that identifies a default config file.
job.res, list, empty list. Named list to specify job resources for an hpc.
cleanup, boolean, FALSE. Remove registry files.