Description
A reimplementation of SparCC algorithm (Friedman et Alm 2012, PLoS Comp Bio, 2012).
Usage
sparcc(data, iter = 20, inner_iter = 10, th = 0.1)
Arguments
data
Community count data matrix
iter
Number of iterations in the outer loop
inner_iter
Number of iterations in the inner loop
th
absolute value of correlations below this threshold are considered zero by the inner SparCC loop.