Get the optimal network, and related structures, when StARS is run.
getOptInd(est)getOptLambda(est)
getOptMerge(est)
getStability(est)
getOptNet(est)
getRefit(est)
getOptBeta(est)
getOptCov(est)
getOptiCov(est)
output from spiec.easi
numeric or matrix associated with a StARS solution.
Use the getter functions to parse spiec.easi
output:
getOptLambda: penalty parameter from provided lambda path
getOptInd: index of the selected lambda from provided lambda path
getOptNet / getRefit: the optimal (StARS-refit) network
getStability: average stability at the selected sparsity
getOptMerge: symmetric matrix with edge-wise stability
getOptiCov: the optimal inverse covariance matrix (glasso only)
getOptCov: the optimal covariance matrix associated with the selected network (glasso only)
getOptBeta: the optimal coefficient matrix (mb only)