SplicingGraphs (version 1.12.0)

bubbles-methods: Compute the bubbles of a splicing graph

Description

bubbles computes the bubbles of the splicing graph of a given gene from a SplicingGraphs object.

Usage

bubbles(x)
ASCODE2DESC

Arguments

x

A SplicingGraphs object of length 1.

Value

TODO

Details

TODO

See Also

This man page is part of the SplicingGraphs package. Please see ?`SplicingGraphs-package` for an overview of the package and for an index of its man pages.

Examples

example(SplicingGraphs)  # create SplicingGraphs object 'sg'
sg

## 'sg' has 1 element per gene and 'names(sg)' gives the gene ids.
names(sg)

plot(sgraph(sg["geneA"], tx_id.as.edge.label=TRUE))
bubbles(sg["geneA"])

plot(sgraph(sg["geneB"], tx_id.as.edge.label=TRUE))
bubbles(sg["geneB"])

plot(sgraph(sg["geneD"], tx_id.as.edge.label=TRUE))
bubbles(sg["geneD"])