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StatCharrms (version 0.90.96)

Statistical Analysis of Chemistry, Histopathology, and Reproduction Endpoints Including Repeated Measures and Multi-Generation Studies

Description

A front end for the statistical analyses involved in the tier II endocrine disruptor screening program. The analyses available to this package are: Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS), a Standard Cochran-Armitage test for trend By Slices (SCABS), mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated measures ANOVA, and Dunnett test.

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Version

Install

install.packages('StatCharrms')

Monthly Downloads

54

Version

0.90.96

License

CC0

Maintainer

Joe Swintek

Last Published

November 14th, 2020

Functions in StatCharrms (0.90.96)

addMultiSpec.std

Add a data specification tab
autoStdAnylsis

Run statistical tests according to OECD guidelines
analyseTime2Effect

Mixed effect time to event analysis
basicAnova

Perform a standard one way ANOVA.
medianData

Calculate the data median
runMultiGen

Runs a mixed effects ANOVA
getLineContrast

Generate contrasts
makeSummaryTable

Generate a summary table of a data set.
buildResultsWindow

Build the results window for the analysis of numerical endpoints
Time2EventMain

GUI for time to event analysis
ReadMeFile

Calls the read me file
checkTime

Checks the format the date is in
tranformTime

Transforms the time variable
StatCharrms-package

StatCharrms
buildResultsWindow.te

Display the results from time to event analyses
fecundityData

Example fecundity data
cleanString

Cleans a string of illegal characters
jonckheereTerpstraTest

Perform the Jonckheere-Terpstra trend test
eventTimeData

Time to event data
dunnsTest

Perform a Dunns test
date2Numeric

Convert a date into a number
forceStdAnalysis

Run a chosen analysis
williamsTest

Performs Williams Test
williamsTestLookUpTable

Look up table for the critical values used in the Williams test.
transformationWarning

Gives warnings about a transformation
wilksTest

Performs the Shapiro-Wilks test.
getFileName

Gets a file name
generateExamples

Generate examples
oneWayDunnettTest

One way Dunnett's test.
leveneTestSC

Levene test for homogeneity of variance
lengthWeightData

Example length and weight data
monotonicityTest

A test for a monotonic trend
rankTransform

Rank transforms a response
responseTransform

Transforms a response
addSpec.te

Add the specification widgets for time to event analysis
Reference

Display the references for StatCharrms
Run.StatCharrms

Main function call for StatCharrms
FindFormat

Find the format the date is written in
StdEndMain

GUI for Analysis of numerical endpoints
ShowChangeLog

Display the change logs for StatCharms