StrainRanking (version 1.2)

PathogenCompositionPtriticinaKalango: Compositions of Puccinia triticina in Kalango crops

Description

Compositions of Puccinia triticina formed from samples collected in Lomagne, South-West France, from 2007 to 2013 (Soubeyrand et al., 2017).

Usage

data(PathogenCompositionPtriticinaKalango)

Format

A data frame with 28 rows, each row providing the pathogen composition (PC) at a given date in years 2007-2013. The dates are provided in Soubeyrand et al. (2017).

References

Soubeyrand S, Garreta V, Monteil C, Suffert F, Goyeau H, Berder J, Moinard J, Fournier E, Tharreau D, Morris C, Sache I (2017). Testing differences between pathogen compositions with small samples and sparse data. Phytopathology 107: 1199-1208. http://doi.org/10.1094/PHYTO-02-17-0070-FI

See Also

PathogenCompositionPtriticinaGalibier

Examples

# NOT RUN {
## Load Pathogen Compositions of P. triticina in Kalango crops
data(PathogenCompositionPtriticinaKalango)

## Size of the first sample
sum(PathogenCompositionPtriticinaKalango[1,])

## Total number of different variants
ncol(PathogenCompositionPtriticinaKalango)

## Display pathogen compositions
x=PathogenCompositionPtriticinaKalango
barplot(t(x), col=rainbow(ncol(x)), las=2, main="P. triticina - Kalango")
# }