SubgrPlots v0.1.0
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Graphical Displays for Subgroup Analysis in Clinical Trials
Provides functions for obtaining a variety of
graphical displays that may be useful in the subgroup analysis setting.
An example with a prostate cancer dataset is provided.
The graphical techniques considered include level plots, mosaic plots,
contour plots, bar charts, Venn diagrams, tree plots, forest plots,
Galbraith plots, L'Abb<c3><a9> plots, the subpopulation treatment effect pattern
plot, alluvial plots, circle plots and UpSet plots.
Functions in SubgrPlots
| Name | Description | |
| prca | Prostate Cancer Dataset | |
| plot_matrix_overlap | matrix plots for relative overlap proportions of pairwise subgroups | |
| plot_radial2 | Radial (Galbraith) plot for subgroup effect size | |
| plot_stepp | STEPP for subgroup effect size | |
| subgroupset | UpSetR Plot with treatment effects | |
| plot_alluvial | Alluvial plot | |
| plot_barchart | Barchart for subgroup effect size | |
| plot_overlap | A graphical display for showing relative proportions of pairwise subgroup overlap with two unidirectional arrowed curved lines around a circle | |
| plot_contour | Contour plot for subgroup effect size | |
| plot_contour_localreg | Contour plot for effect size via local regression. | |
| plot_dissimilarity | a plot for displaying dissimilarity distances of subgroups | |
| plot_dissimilarity_alternative | An alternative plot for displaying dissimilarity distances of subgroups | |
| plot_overlap2 | a graphical display for showing relative proportions of pairwise subgroup overlap with two unidirectional arrowed curved lines around a circle | |
| plot_level | Level plot for subgroup effect size | |
| plot_tree | Tree plot for subgroup effect size | |
| plot_venn | Venn diagram for subgroup effect size | |
| plot_circle | Circular plot using circlize package | |
| plot_mosaic | Mosaic plot | |
| plot_circle2 | Circular plot using circlize package with matrix layout. | |
| plot_network | network overlap plot (only works for binary variables) | |
| plot_forest | Forest plot for subgroup effect size | |
| plot_labbe | L'Abbe plot for subgroup effect size | |
| plot_radial | Radial (Galbraith) plot for subgroup effect size | |
| plot_overlap_alternative | a graphical display for showing relative proportions of pairwise subgroup overlap with two unidirectional arrowed lines around two circle | |
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Details
| Type | Package |
| License | MIT + file LICENSE |
| Encoding | UTF-8 |
| LazyData | true |
| RoxygenNote | 5.0.1 |
| NeedsCompilation | no |
| Packaged | 2018-07-09 08:04:35 UTC; nico |
| Repository | CRAN |
| Date/Publication | 2018-07-10 17:10:09 UTC |
| imports | alluvial , circlize , colorspace , diagram , dplyr , geoR , ggplot2 (>= 2.1.1) , grid , gridBase , gridExtra , methods , plyr , polyclip , scales , shape , sp , survival , survRM2 , UpSetR , VennDiagram |
| depends | graphics , R (>= 2.10) |
| suggests | rgeos |
| Contributors | Michal Bojanowski, Yi-Da Chiu, Jake Conway, Nils Gehlenborg, Robin Edwards |
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