get.var.counts.seq

Get signature variables from output of seqlr.batting.

Implementation of Sequential BATTing (bootstrapping and aggregating of thresholds from trees) for developing threshold-based multivariate (prognostic/predictive) biomarker signatures. Variable selection is automatically built-in. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output. Detail algorithms are described in Huang et al (2017) <doi:10.1002/sim.7236>.

Xin Huang

SubgrpID

Patient Subgroup Identification for Clinical Drug Development

Yan Sun

Saptarshi Chatterjee

Paul Trow

get.var.counts.seq function

<dl><dt>sig.list</dt>
<dd>signature list returned by seqlr.batting.</dd>
<dt>xvars</dt>
<dd>predictor variable names</dd></dl>

Arguments

get.var.counts.seq — get.var.counts.seq

<dl>

<dt>sig.list</dt>
<dd>signature list returned by seqlr.batting.</dd>


<dt>xvars</dt>
<dd>predictor variable names</dd>

</dl>

get.var.counts.seq: get.var.counts.seq

Description

Usage

Value

Arguments