SubpathwayLNCE (version 1.0)

getInteUMGraph: Get the reconstructed condition-specific lncRNA-regulated signal pathways

Description

Get the reconstructed condition-specific LncRNA-regulated signal pathways embedded by lncRNAs of competitive regulation through linking to their regulated-mRNAs.

Usage

getInteUMGraph(LncGenePairs)

Arguments

LncGenePairs

A data frame. It contains two columns, the first is lncRNA names and the second is mRNA names.

Value

A graph list.

Details

The argument "LncGenePairs" represents competitively regulated lncRNA-mRNA interactions, which can be returned from the getLncGenePairs.

See Also

getLncGenePairs

Examples

## Not run: 
# 
# ### Integrate lncRNAs of competitive regulation into KEGG pathway graphs ###
#   LncGenePairs<-GetExampleData(exampleData="LncGenePairs")
#   inteUMGraph<-getInteUMGraph(LncGenePairs)
#  ## End(Not run)