SubpathwayLNCE (version 1.0)

printGraphW: Print the results of graph annotation and identification

Description

Print the results of graph annotation and identification.

Usage

printGraphW(ann,detail=FALSE)

Arguments

ann

A list. The value was returned from the function identifyLncGraphW.

detail

A logical. If true, gene lists from the function identifyLncGraphW are converted into strings, which are used to display and write results with genes.

Value

A data.frame. Columns include pathwayId, pathwayName, annMoleculeRatio, annBgRatio,annWeight, pvalue, 'fdr', annMoleculeList, annBgMoleculeList. Detailed information is provided in identifyLncGraphW.

See Also

identifyLncGraphW

Examples

## Not run: 
# ### Integrate lncRNAs of competitive regulation into KEGG pathway graphs ###
#   LncGenePairs<-GetExampleData(exampleData="LncGenePairs")
#   inteUMGraph<-getInteUMGraph(LncGenePairs)
# ### get user-interested lncRNAs and genes sets.
#   geneLnc<-GetExampleData(exampleData="geneLnc")
# # get locate subpathways.
#   sub<-getLocSubGraphLnc(geneLnc,inteUMGraph,type="gene_lncRNA",n=1,s=8)
#   SubcodeLncResult<-identifyLncGraphW(geneLnc,sub,type="gene_lncRNA",bet=1)
#   resultT<-printGraphW(SubcodeLncResult,detail=TRUE)
# 
# 
# ## End(Not run)