SummarizedExperiment v1.2.3

SummarizedExperiment container

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

Functions in SummarizedExperiment

Name Description
inter-range-methods Inter range transformations of a RangedSummarizedExperiment object
intra-range-methods Intra range transformations of a RangedSummarizedExperiment object
Assays-class Assays objects
findOverlaps-methods Finding overlapping ranges in RangedSummarizedExperiment objects
readKallisto Input kallisto or kallisto bootstrap results.
RangedSummarizedExperiment-class RangedSummarizedExperiment objects
coverage-methods Coverage of a RangedSummarizedExperiment object
nearest-methods Finding the nearest range neighbor in RangedSummarizedExperiment objects
makeSummarizedExperimentFromExpressionSet Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa
SummarizedExperiment-class SummarizedExperiment objects
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biocViews Genetics, Infrastructure, Sequencing, Annotation, Coverage, GenomeAnnotation
VignetteBuilder knitr
License Artistic-2.0
Collate utils.R Assays-class.R SummarizedExperiment-class.R RangedSummarizedExperiment-class.R intra-range-methods.R inter-range-methods.R coverage-methods.R findOverlaps-methods.R nearest-methods.R makeSummarizedExperimentFromExpressionSet.R readKallisto.R zzz.R

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