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SummarizedExperiment (version 1.2.3)
SummarizedExperiment container
Description
The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.
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Version
Version
1.2.3
1.0.0
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Version
1.2.3
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in SummarizedExperiment (1.2.3)
Search functions
inter-range-methods
Inter range transformations of a RangedSummarizedExperiment object
intra-range-methods
Intra range transformations of a RangedSummarizedExperiment object
Assays-class
Assays objects
findOverlaps-methods
Finding overlapping ranges in RangedSummarizedExperiment objects
readKallisto
Input kallisto or kallisto bootstrap results.
RangedSummarizedExperiment-class
RangedSummarizedExperiment objects
coverage-methods
Coverage of a RangedSummarizedExperiment object
nearest-methods
Finding the nearest range neighbor in RangedSummarizedExperiment objects
makeSummarizedExperimentFromExpressionSet
Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa
SummarizedExperiment-class
SummarizedExperiment objects