sc_mixing_score

Compute mixing of single-cells within supercell

Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. 'SuperCell' uses 'velocyto.R' <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity. We also recommend installing 'scater' Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.

Leonard Herault

SuperCell

Simplification of scRNA-Seq Data by Merging Together Similar
Cells

Mariia Bilous

sc_mixing_score function

<dl><dt>SC</dt>
<dd>super-cell object (output of SCimplify function)</dd>
<dt>clusters</dt>
<dd>vector of clustering assignment (reference assignment)</dd></dl>

Arguments

Compute mixing of single-cells within supercell — sc_mixing_score

<dl>

<dt>SC</dt>
<dd>super-cell object (output of SCimplify function)</dd>


<dt>clusters</dt>
<dd>vector of clustering assignment (reference assignment)</dd>

</dl>

sc_mixing_score: Compute mixing of single-cells within supercell

Description

Usage

Value

Arguments