SuperCell (version 1.0)

supercell_GeneGenePlot_single: Plot Gene-gene correlation plot for 1 feature

Description

Used for supercell_GeneGenePlot

Usage

supercell_GeneGenePlot_single(
  ge_x,
  ge_y,
  gene_x_name,
  gene_y_name,
  supercell_size = NULL,
  clusters = NULL,
  color.use = NULL,
  x.max = NULL,
  y.max = NULL,
  pt.size = 1,
  alpha = 0.9
)

Arguments

ge_x

first gene expression vector (same length as number of super-cells)

ge_y

second gene expression vector (same length as number of super-cells)

gene_x_name

name of gene x

gene_y_name

name of gene y

supercell_size

a vector with supercell size (ordered the same way as in ge)

clusters

a vector with clustering information (ordered the same way as in ge)

color.use

colors for idents

x.max

max of x axis

y.max

max of y axis

pt.size

point size (0 by default)

alpha

transparency of dots