SuperCell (version 1.0)

supercell_plot_UMAP: Plot super-cell UMAP (Use supercell_DimPlot instead) Plots super-cell UMAP (result of supercell_UMAP)

Description

Plot super-cell UMAP (Use supercell_DimPlot instead) Plots super-cell UMAP (result of supercell_UMAP)

Usage

supercell_plot_UMAP(
  SC,
  groups,
  UMAP_name = "SC_UMAP",
  color.use = NULL,
  asp = 1,
  alpha = 0.7,
  title = NULL
)

Value

ggplot

Arguments

SC

super-cell structure (output of SCimplify) with a field UMAP_name containing UMAP result

groups

coloring metacells by groups

UMAP_name

the mane of the field containing UMAP result

color.use

colors of groups

asp

plot aspect ratio

alpha

transparency of

title

title of the plot