SuperCell (version 1.0)

supercell_plot_tSNE: Plot super-cell tSNE (Use supercell_DimPlot instead) Plots super-cell tSNE (result of supercell_tSNE)

Description

Plot super-cell tSNE (Use supercell_DimPlot instead) Plots super-cell tSNE (result of supercell_tSNE)

Usage

supercell_plot_tSNE(
  SC,
  groups,
  tSNE_name = "SC_tSNE",
  color.use = NULL,
  asp = 1,
  alpha = 0.7,
  title = NULL
)

Value

ggplot

Arguments

SC

super-cell structure (output of SCimplify) with a field tSNE_name containing tSNE result

groups

coloring metacells by groups

tSNE_name

the mane of the field containing tSNE result

color.use

colors of groups

asp

plot aspect ratio

alpha

transparency of

title

title of the plot