supercell_silhouette

Compute Silhouette index accounting for samlpe size (super cells size) ###

Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. 'SuperCell' uses 'velocyto.R' <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity. We also recommend installing 'scater' Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.

Leonard Herault

SuperCell

Simplification of scRNA-Seq Data by Merging Together Similar
Cells

Mariia Bilous

supercell_silhouette function

<dl><dt>x</dt>
<dd>-- clustering</dd>
<dt>dist</dt>
<dd>- distance among super-cells</dd>
<dt>supercell_size</dt>
<dd>-- super-cell size</dd></dl>

Arguments

Compute Silhouette index accounting for samlpe size (super cells size) ### — supercell_silhouette

<dl>

<dt>x</dt>
<dd>-- clustering</dd>


<dt>dist</dt>
<dd>- distance among super-cells</dd>


<dt>supercell_size</dt>
<dd>-- super-cell size</dd>

</dl>

supercell_silhouette: Compute Silhouette index accounting for samlpe size (super cells size) ###

Description

Usage

Value

Arguments