supercell_rescale

This function recomputes super-cell structure at a different graining level (<code>gamma</code>) or
for a specific number of super-cells (<code>N.SC</code>)

Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. 'SuperCell' uses 'velocyto.R' <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity and 'WeightedCluster' <doi:10.12682/lives.2296-1658.2013.24> <https://mephisto.unige.ch/weightedcluster/> for weighted clustering on metacells. We also recommend installing 'scater' Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.

Matei Teleman

SuperCell

Simplification of scRNA-Seq Data by Merging Together Similar
Cells

Mariia Bilous

supercell_rescale function

<dl><dt>SC.object</dt>
<dd>super-cell object (an output from SCimplify function)</dd>
<dt>gamma</dt>
<dd>new grainig level (provide either <code>gamma</code> or <code>N.SC</code>)</dd>
<dt>N.SC</dt>
<dd>new number of super-cells (provide either <code>gamma</code> or <code>N.SC</code>)</dd></dl>

Arguments

Rescale supercell object — supercell_rescale

<dl>

<dt>SC.object</dt>
<dd>super-cell object (an output from SCimplify function)</dd>


<dt>gamma</dt>
<dd>new grainig level (provide either <code>gamma</code> or <code>N.SC</code>)</dd>


<dt>N.SC</dt>
<dd>new number of super-cells (provide either <code>gamma</code> or <code>N.SC</code>)</dd>

</dl>

supercell_rescale: Rescale supercell object

Description

Usage

Value

Arguments