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SuperExactTest (version 1.0.7)

Exact Test and Visualization of Multi-Set Intersections

Description

Identification of sets of objects with shared features is a common operation in all disciplines. Analysis of intersections among multiple sets is fundamental for in-depth understanding of their complex relationships. This package implements a theoretical framework for efficient computation of statistical distributions of multi-set intersections based upon combinatorial theory, and provides multiple scalable techniques for visualizing the intersection statistics. The statistical algorithm behind this package was published in Wang et al. (2015) .

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install.packages('SuperExactTest')

Monthly Downloads

271

Version

1.0.7

License

GPL-3

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Maintainer

Minghui Wang

Last Published

June 21st, 2019

Functions in SuperExactTest (1.0.7)

MSET

Exact Test of Multi-Set Intersection
GWAS

GAWS Catalog Dataset
supertest

Calculate Intersections Among Multiple Sets and Perform Statistical Tests
jaccard

Calculate Jaccard Index
plot.msets

Draw Multi-Set Intersections
msets

Class to Contain Multi-Set Intersections
Cancer

Cancer Census Dataset
deBarcode

Decrypt Barcode
cpsets

Multi-Set Intersection Probability
cis.eqtls

cis-eQTLs
intersectElements

Find Intersection Membership
summary.msets

Summarize an msets Object
intersect

Set Operations
SuperExactTest

SuperExactTest Package