SuperExactTest v1.0.7

0

Monthly downloads

0th

Percentile

Exact Test and Visualization of Multi-Set Intersections

Identification of sets of objects with shared features is a common operation in all disciplines. Analysis of intersections among multiple sets is fundamental for in-depth understanding of their complex relationships. This package implements a theoretical framework for efficient computation of statistical distributions of multi-set intersections based upon combinatorial theory, and provides multiple scalable techniques for visualizing the intersection statistics. The statistical algorithm behind this package was published in Wang et al. (2015) <doi:10.1038/srep16923>.

Functions in SuperExactTest

Name Description
MSET Exact Test of Multi-Set Intersection
GWAS GAWS Catalog Dataset
supertest Calculate Intersections Among Multiple Sets and Perform Statistical Tests
jaccard Calculate Jaccard Index
plot.msets Draw Multi-Set Intersections
msets Class to Contain Multi-Set Intersections
Cancer Cancer Census Dataset
deBarcode Decrypt Barcode
cpsets Multi-Set Intersection Probability
cis.eqtls cis-eQTLs
intersectElements Find Intersection Membership
summary.msets Summarize an msets Object
intersect Set Operations
SuperExactTest SuperExactTest Package
No Results!

Vignettes of SuperExactTest

Name
set_html.Rmd
No Results!

Last month downloads

Details

Type Package
Date 2019-06-14
Contact Minghui Wang , Bin Zhang
License GPL-3
VignetteBuilder knitr
URL https://github.com/mw201608/SuperExactTest/
BugReports https://github.com/mw201608/SuperExactTest/issues
NeedsCompilation yes
Packaged 2019-06-21 18:56:15 UTC; mhwan
Repository CRAN
Date/Publication 2019-06-21 19:10:03 UTC

Include our badge in your README

[![Rdoc](http://www.rdocumentation.org/badges/version/SuperExactTest)](http://www.rdocumentation.org/packages/SuperExactTest)