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SuperGauss (version 1.0.2)

Superfast Likelihood Inference for Stationary Gaussian Time Series

Description

Likelihood evaluations for stationary Gaussian time series are typically obtained via the Durbin-Levinson algorithm, which scales as O(n^2) in the number of time series observations. This package provides a "superfast" O(n log^2 n) algorithm written in C++, crossing over with Durbin-Levinson around n = 300. Efficient implementations of the score and Hessian functions are also provided, leading to superfast versions of inference algorithms such as Newton-Raphson and Hamiltonian Monte Carlo. The C++ code provides a Toeplitz matrix class packaged as a header-only library, to simplify low-level usage in other packages and outside of R.

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Version

Install

install.packages('SuperGauss')

Monthly Downloads

196

Version

1.0.2

License

GPL-3

Maintainer

Martin Lysy

Last Published

February 27th, 2020

Functions in SuperGauss (1.0.2)

Choleski

Choleski multiplication with Toeplitz variance matrices.
acf2msd

Convert autocorrelation of stationary increments to mean squared displacement of posititions.
Toeplitz-class

Constructor and methods for Toeplitz matrix objects.
Snorm.hess

Hessian of the loglikelihood of a multivariate normal with Toeplitz variance matrix.
fbm.msd

Mean square displacement of fractional Brownian motion.
dSnorm

Density of a multivariate normal with Toeplitz variance matrix.
matern.acf

Matern autocorrelation function.
SuperGauss

Superfast inference for stationary Gaussian time series.
acf2incr

Convert position to increment autocorrelations.
msd2acf

Convert mean square displacement to autocorrelations.
pex.acf

Power-exponential autocorrelation function.
rSnorm

Simulation of a stationary Gaussian time series.
Snorm.grad

Gradient of the loglikelihood of a multivariate normal with Toeplitz variance matrix.
toep.mult

Toeplitz matrix multiplication.