Learn R Programming

⚠️There's a newer version (0.6.0.1) of this package.Take me there.

SurrogateRegression (version 0.5.0)

Surrogate Outcome Regression Analysis

Description

Performs estimation and inference on a partially missing target outcome while borrowing information from a correlated surrogate outcome to increase estimation precision and improve power. The target and surrogate outcomes are jointly modeled within a bivariate outcome regression framework. Unobserved values of either outcome are regarded as missing data. Estimation in the presence of bilateral outcome missingness is performed via an expectation conditional maximization algorithm. A flexible association test is provided for evaluating hypotheses about the target regression parameters. See McCaw ZR, Gaynor SM, Sun R, Lin X; “Cross-tissue eQTL mapping in the presence of missing data via surrogate outcome analysis” .

Copy Link

Version

Install

install.packages('SurrogateRegression')

Monthly Downloads

225

Version

0.5.0

License

GPL-3

Maintainer

Zachary McCaw

Last Published

December 3rd, 2020

Functions in SurrogateRegression (0.5.0)

Fit.BNLS

Fit Bivariate Normal Regression Model via Least Squares
CovUpdate

Covariate Update
CheckTestSpec

Check Test Specification
Fit.BNEM

Fit Bivariate Normal Regression Model via Expectation Maximization.
Fit.BNR

Fit Bivariate Normal Regression Model.
IterUpdate

Update Iteration
CovInfo

Covariance Information Matrix
CovTab

Tabulate Covariance Parameters
PartitionData

Partition Data by Outcome Missingness Pattern.
ParamInit

Parameter Initialization
Score.BNEM

Score Test via Expectation Maximization.
tr

Matrix Trace
Wald.BNLS

Wald Test via Least Squares.
Wald.BNEM

Wald Test via Expectation Maximization.
coef.bnr

Extract Coefficients from Bivariate Regression Model
fitOLS

Ordinary Least Squares
SurrogateRegression

SurrogateRegression: Surrogate Outcome Regression Analysis
vcov.bnr

Extract Covariance Matrix from Bivariate Normal Regression Model
print.bnr

Print for Bivariate Regression Model
matQF

Quadratic Form
RegUpdate

Regression Update
SchurC

Schur complement
Test.BNR

Test Bivariate Normal Regression Model.
bnr-class

Bivariate Regression Model
MMP

Matrix Matrix Product
ObsLogLik

Observed Data Log Likelihood
show,bnr-method

Show for Bivariate Regression Model
RegInfo

Regression Information
RegTab

Tabulate Regression Coefficients
matDet

Matrix Determinant
matIP

Matrix Inner Product
UpdateEM

EM Update
residuals.bnr

Extract Residuals from Bivariate Regression Model
rBNR

Simulate Bivariate Normal Data with Missingness
matOP

Matrix Outer Product
matInv

Matrix Inverse
CheckInit

Check Initiation
FormatOutput

Format Output