SynergizeR (version 0.2)

synergizer: Translate a set of biological identifiers into an selected alternative.

Description

This function will translate between sets of biological identifiers.

Usage

synergizer(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol", range = "entrezgene", ids = NULL, file = NULL)

Arguments

authority

A character containing any authoritative sources of identifier-mapping information.

species

A character containing the Species. Note that the range of species supported depends on the choice of authority. Examples: Homo sapiens, Mus musculus.

domain

This is the "namespace" (naming scheme) of the database identifiers the user wishes to translate. Examples: embl, ipi

range

This is the "namespace" (naming scheme) to which the user wishes to translate the input identifiers. Examples: embl, ipi

ids

a vector containing the ids to be translated

file

NULL or a string containing the name of the file where the ids will be saved

Value

A vector containing the translated ids.

References

http://llama.mshri.on.ca/synergizer/translate/

Examples

## Not run: 
# library('SynergizerR')
# symbols.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="affy_hg_u95av2", range="hgnc_symbol",ids=c("1939_at","1503_at","1454_at") )
# entrez.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="hgnc_symbol", range="entrezgene",ids=c("snph", "pja1", "prkdc", "RAD21L1", "Rorc", "kcnk16") ) ## End(Not run)