draw_step_tree

Drawing of metabolic process matrix diagram and phylogenetic tree diagram

In the past decade, genome-scale metabolic reconstructions have widely been
used to comprehend the systems biology of metabolic pathways within an organism.
Different GSMs are constructed using various techniques that
require distinct steps, but the input data, information conversion and software tools
are neither concisely defined nor mathematically or programmatically formulated
in a context-specific manner.The tool that quantitatively and qualitatively specifies
each reconstruction steps and can generate a template list of reconstruction steps dynamically
selected from a reconstruction step reservoir, constructed based on all available published papers.

Shilin Ouyang

Sysrecon

Systematical Metabolic Reconstruction

Zihao Li

Jiamin Hu

Miyuan Cao

Feng Yu

Longfei Mao

RStudio 

draw_step_tree function

<dl><dt>infomatrix</dt>
<dd>Matrix generated using the words2steps function</dd>
<dt>Matrix</dt>
<dd>The matrix about the steps or transformation or the databases and tools of the metabolic reconstruction.</dd>
<dt>stepTypes</dt>
<dd>Grouping information for metabolic processes</dd>
<dt>contentTypes</dt>
<dd>Grouping information for metabolic content</dd></dl>

Arguments

draw_step_tree — draw_step_tree

<dl>

<dt>infomatrix</dt>
<dd>Matrix generated using the words2steps function</dd>


<dt>Matrix</dt>
<dd>The matrix about the steps or transformation or the databases and tools of the metabolic reconstruction.</dd>


<dt>stepTypes</dt>
<dd>Grouping information for metabolic processes</dd>


<dt>contentTypes</dt>
<dd>Grouping information for metabolic content</dd>

</dl>

draw_step_tree: draw_step_tree

Description

Usage

Value

Arguments

Examples