matrixProcessFile

A data frame produced by the function map_to_word in the function vizProcess

datasets

In the past decade, genome-scale metabolic reconstructions have widely been
used to comprehend the systems biology of metabolic pathways within an organism.
Different GSMs are constructed using various techniques that
require distinct steps, but the input data, information conversion and software tools
are neither concisely defined nor mathematically or programmatically formulated
in a context-specific manner.The tool that quantitatively and qualitatively specifies
each reconstruction steps and can generate a template list of reconstruction steps dynamically
selected from a reconstruction step reservoir, constructed based on all available published papers.

Shilin Ouyang

Sysrecon

Systematical Metabolic Reconstruction

Zihao Li

Jiamin Hu

Miyuan Cao

Feng Yu

Longfei Mao

RStudio 

matrixProcessFile function

A data frame contains with 3 variables<dl>
 <dt>step</dt>
<dd>the steps used in the metabolic reconstruction</dd> <dt>degree</dt>
<dd>the number that steps used in the metbolic reconstructoin occur in an article</dd> <dt>step_ID</dt>
<dd>the order of the steps used in the metabolic reconstruction</dd> 
</dl>

Format

A data frame produced by the function map_to_word in the function vizProcess — matrixProcessFile

A data frame contains with 3 variables<dl>
 <dt>step</dt>
<dd>the steps used in the metabolic reconstruction</dd>

 <dt>degree</dt>
<dd>the number that steps used in the metbolic reconstructoin occur in an article</dd>

 <dt>step_ID</dt>
<dd>the order of the steps used in the metabolic reconstruction</dd>

 
</dl>

matrixProcessFile: A data frame produced by the function map_to_word in the function vizProcess

Description

Usage

Arguments

Format