vizTools

Input the txt and output the visualization of the steps, transformation and databases and tools.

In the past decade, genome-scale metabolic reconstructions have widely been
used to comprehend the systems biology of metabolic pathways within an organism.
Different GSMs are constructed using various techniques that
require distinct steps, but the input data, information conversion and software tools
are neither concisely defined nor mathematically or programmatically formulated
in a context-specific manner.The tool that quantitatively and qualitatively specifies
each reconstruction steps and can generate a template list of reconstruction steps dynamically
selected from a reconstruction step reservoir, constructed based on all available published papers.

Shilin Ouyang

Sysrecon

Systematical Metabolic Reconstruction

Zihao Li

Jiamin Hu

Miyuan Cao

Feng Yu

Longfei Mao

RStudio 

vizTools function

<dl><dt>text</dt>
<dd>The characters processed with the collapse = ' '.</dd>
<dt>toolsMatrix</dt>
<dd>A data frame contains the marker words, threshold value, steps, group and other information about the metabolic reconstruction databases and tools. The default file is in the data.</dd>
<dt>stepTypes</dt>
<dd>A data frame contains the labels and groups of the metabolic reconstructions steps. The default file is in the data.</dd>
<dt>toolsTypes</dt>
<dd>A data frame contains the databases and the tools used in the metabolic reconstruction.</dd></dl>

Arguments

vizTools — vizTools

<dl>

<dt>text</dt>
<dd>The characters processed with the collapse = ' '.</dd>


<dt>toolsMatrix</dt>
<dd>A data frame contains the marker words, threshold value, steps, group and other information about the metabolic reconstruction databases and tools. The default file is in the data.</dd>


<dt>stepTypes</dt>
<dd>A data frame contains the labels and groups of the metabolic reconstructions steps. The default file is in the data.</dd>


<dt>toolsTypes</dt>
<dd>A data frame contains the databases and the tools used in the metabolic reconstruction.</dd>

</dl>

vizTools: vizTools

Description

Usage

Value

Arguments

Examples