clean.library

Selectively remove packages from the local TAF library if not listed in
<code>SOFTWARE.bib</code>.

Functions to organize data, methods, and results used in scientific
analyses. A TAF analysis consists of four scripts (data.R, model.R, output.R,
report.R) that are run sequentially. Each script starts by reading files from
a previous step and ends with writing out files for the next step. Convenience
functions are provided to version control the required data and software, run
analyses, clean residues from previous runs, manage files, manipulate tables,
and produce figures. With a focus on stability and reproducible analyses, TAF
is designed to have no package dependencies. TAF forms a base layer for the
'icesTAF' package and other scientific applications.

Arni Magnusson

Transparent Assessment Framework for Reproducible Research

Colin Millar

Alexandros Kokkalis

Iago Mosqueira

Ibrahim Umar

Hjalte Parner

clean.library function

<dl><dt>folder</dt>
<dd>location of local TAF library.</dd>
<dt>quiet</dt>
<dd>whether to suppress messages about removed packages.</dd>
<dt>force</dt>
<dd>whether to remove the local TAF library, regardless of how it
compares to <code>SOFTWARE.bib</code> entries.</dd></dl>

Arguments

Clean TAF Library — clean.library

<dl>

<dt>folder</dt>
<dd>location of local TAF library.</dd>


<dt>quiet</dt>
<dd>whether to suppress messages about removed packages.</dd>


<dt>force</dt>
<dd>whether to remove the local TAF library, regardless of how it
compares to <code>SOFTWARE.bib</code> entries.</dd>

</dl>

clean.library: Clean TAF Library

Description

Usage

Value

Arguments

See Also

Examples