clean.software

Selectively remove software from the local TAF software folder if not listed
in <code>SOFTWARE.bib</code>.

Functions to organize data, methods, and results used in scientific
analyses. A TAF analysis consists of four scripts (data.R, model.R, output.R,
report.R) that are run sequentially. Each script starts by reading files from
a previous step and ends with writing out files for the next step. Convenience
functions are provided to version control the required data and software, run
analyses, clean residues from previous runs, manage files, manipulate tables,
and produce figures. With a focus on stability and reproducible analyses, TAF
is designed to have no package dependencies. TAF forms a base layer for the
'icesTAF' package and other scientific applications.

Arni Magnusson

Transparent Assessment Framework for Reproducible Research

Colin Millar

Alexandros Kokkalis

Iago Mosqueira

Ibrahim Umar

Hjalte Parner

clean.software function

<dl><dt>folder</dt>
<dd>location of local TAF software folder.</dd>
<dt>quiet</dt>
<dd>whether to suppress messages about removed software.</dd>
<dt>force</dt>
<dd>whether to remove the local TAF software folder, regardless of
how it compares to <code>SOFTWARE.bib</code> entries.</dd></dl>

Arguments

Clean TAF Software — clean.software

<dl>

<dt>folder</dt>
<dd>location of local TAF software folder.</dd>


<dt>quiet</dt>
<dd>whether to suppress messages about removed software.</dd>


<dt>force</dt>
<dd>whether to remove the local TAF software folder, regardless of
how it compares to <code>SOFTWARE.bib</code> entries.</dd>

</dl>

clean.software: Clean TAF Software

Description

Usage

Value

Arguments

See Also

Examples