clean.library

Selectively remove packages from the local TAF library if not listed in
<code>SOFTWARE.bib</code>.

General framework to organize data, methods, and results used in
reproducible scientific analyses. A TAF analysis consists of four scripts
(data.R, model.R, output.R, report.R) that are run sequentially. Each script
starts by reading files from a previous step and ends with writing out files
for the next step. Convenience functions are provided to version control the
required data and software, run analyses, clean residues from previous runs,
manage files, manipulate tables, and produce figures. With a focus on
stability and reproducible analyses, the TAF package comes with no
dependencies. TAF forms a base layer for the 'icesTAF' package and other
scientific applications.

Arni Magnusson

Transparent Assessment Framework for Reproducible Research

Colin Millar

Iago Mosqueira

Alexandros Kokkalis

Ibrahim Umar

Hjalte Parner

clean.library function

<dl><dt>folder</dt>
<dd>location of local TAF library.</dd>
<dt>quiet</dt>
<dd>whether to suppress messages about removed packages.</dd>
<dt>force</dt>
<dd>whether to remove the local TAF library, regardless of how it
compares to <code>SOFTWARE.bib</code> entries.</dd></dl>

Arguments

Clean TAF Library — clean.library

<dl>

<dt>folder</dt>
<dd>location of local TAF library.</dd>


<dt>quiet</dt>
<dd>whether to suppress messages about removed packages.</dd>


<dt>force</dt>
<dd>whether to remove the local TAF library, regardless of how it
compares to <code>SOFTWARE.bib</code> entries.</dd>

</dl>

clean.library: Clean TAF Library

Description

Usage

Value

Arguments

See Also

Examples