TBRDist (version 1.0.2)

Rearrangement Distances Between Unrooted Phylogenetic Trees

Description

Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) .

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Install

install.packages('TBRDist')

Monthly Downloads

161

Version

1.0.2

License

GPL (>= 3)

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Repository

https://github.com/ms609/TBRDist/

Homepage

https://ms609.github.io/TBRDist/

Maintainer

Martin R. Smith

Last Published

September 17th, 2020

Functions in TBRDist (1.0.2)

TreeRearrangementDistances

Calculate SPR, TBR and Replug distances on unrooted trees

.PrepareTrees

Prepare trees for passing to uspr

internals

Internal functions