TCGAquery_integrate

query


In order to help the user to have an overview of the number of
samples in common we created the function `TCGAquery_integrate` that will receive the
data frame returned from `TCGAquery` and produce a matrix n platforms x n platforms
with the values of samples in commun.


The aim of TCGAbiolinks is : i) facilitate the TCGA open-access
data retrieval, ii) prepare the data using the appropriate pre-processing
strategies, iii) provide the means to carry out different standard analyses
and iv) allow the user to download a specific version of the data and thus
to easily reproduce earlier research results. In more detail, the package
provides multiple methods for analysis (e.g., differential expression analysis,
identifying differentially methylated regions) and methods for visualization
(e.g., survival plots, volcano plots, starburst plots) in order to easily
develop complete analysis pipelines.

Antonio Colaprico

TCGAbiolinks

TCGAbiolinks: An R/Bioconductor package for integrative analysis with
TCGA data

TCGAquery_integrate function

In order to help the user to have an overview of the number of
samples in common we created the function `TCGAquery_integrate` that will receive the
data frame returned from `TCGAquery` and produce a matrix n platforms x n platforms
with the values of samples in commun.

TCGAquery_integrate: Filtering common samples among platforms from TCGAquery for the same tumor

Description

Usage

Arguments

Value

Examples