TCGAquery_subtype

is a cancer Examples:
<table><tr><td>
lgg   </td>
<td> gbm </td>
<td> luad </td>
<td> stad </td>
</tr><tr><td> brca</td>
<td>
lgg   </td>
<td> gbm </td>
<td> luad </td>
</tr></table>

tumor


TCGAquery_subtype Retrieve molecular subtypes for a given tumor


The aim of TCGAbiolinks is : i) facilitate the TCGA open-access
data retrieval, ii) prepare the data using the appropriate pre-processing
strategies, iii) provide the means to carry out different standard analyses
and iv) allow the user to download a specific version of the data and thus
to easily reproduce earlier research results. In more detail, the package
provides multiple methods for analysis (e.g., differential expression analysis,
identifying differentially methylated regions) and methods for visualization
(e.g., survival plots, volcano plots, starburst plots) in order to easily
develop complete analysis pipelines.

Antonio Colaprico

TCGAbiolinks

TCGAbiolinks: An R/Bioconductor package for integrative analysis with
TCGA data

TCGAquery_subtype function

is a cancer Examples:
<tabular>lllll</tabular>{
lgg   	gbm 	luad 	stad 	brcacoad 	read 			}

TCGAquery_subtype Retrieve molecular subtypes for a given tumor

TCGAquery_subtype: Retrieve molecular subtypes for a given tumor

Description

Usage

Arguments

Value

Examples