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TCGAretriever (version 1.3)

expand_cases: Explode TCGA Case Identifiers from a TCGA Study

Description

Each TCGA Study includes one or more Case Lists, that are lists of sample/patient identifiers. All Case Lists for a Study of Interest are retrieved and the individual case identifiers belonging to each of those lists are exploded and returned.

Usage

expand_cases(csid = NULL)

Arguments

csid

String corresponding to a TCGA Cancer Study identifier

Value

List containing as many elements as TCGA Case Lists available for a given TCGA Study. Each element is a list containing two elements: a) String corresponding to the Id of the case list as defined by TCGA. b)Character vector including all the case Ids belonging to the corresponding Case List.

References

http://www.biotechworld.it/bioinf/2016/07/11/tcga-data-via-tcgaretriever/

Examples

Run this code
# NOT RUN {
expand_cases("blca_tcga")
# }

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