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Retrieve Data corresponding to a Genetic Profile of interest from a study of interest. This function is the workhorse of the TCGAretriever package and can be used to fetch data concerning several genes at once. For larger queries, the use of the fetch_all_tcgadata() function is mandatory.
get_profile_data(
case_id = "blca_tcga_all",
gprofile_id = "blca_tcga_mutations",
glist = c("TP53", "E2F1"),
force_numeric = FALSE
)
data.frame with one row per gene and one column per case/sample
String corresponding to the Identifier of a list of cases
String corresponding to the Identifier of a genetic Profile of interest
Character vector including one or more gene identifiers (ENTREZID or OFFICIAL_SYMOL)
logical. Shall numeric data be coerced to numeric?
Damiano Fantini, damiano.fantini@gmail.com
get_profile_data("blca_tcga_all", "blca_tcga_mutations", c("TP53", "E2F1"))
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