get_gene_identifiers

Obtain all valid gene identifiers, including ENTREZ gene identifiers and 
HUGO gene symbols. Genes are classified according to the gene type 
(*e.g.*, 'protein-coding', 'pseudogene', 'miRNA', ...). Note that 
miRNA and phosphoprotein genes are associated with a negative entrezGeneId.

The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <https://www.cbioportal.org/> for more information).

Damiano Fantini

TCGAretriever

Retrieve Genomic and Clinical Data from CBioPortal Including
TCGA Data

get_gene_identifiers function

<dl><dt>dryrun</dt>
<dd>Logical. If TRUE, all other arguments (if any) are ignored and 
a representative example is returned as output. No Internet connection is 
required for executing the operation when `dryrun` is TRUE.</dd></dl>

Arguments

Damiano Fantini, <a href="/link/damiano.fantini%40gmail.com?package=TCGAretriever&version=1.9.1" data-mini-rdoc="TCGAretriever::damiano.fantini@gmail.com">damiano.fantini@gmail.com</a>

Author

Retrieve All Gene Identifiers — get_gene_identifiers

<dl>

<dt>dryrun</dt>
<dd>Logical. If TRUE, all other arguments (if any) are ignored and 
a representative example is returned as output. No Internet connection is 
required for executing the operation when `dryrun` is TRUE.</dd>

</dl>

Damiano Fantini, <a href='mailto:damiano.fantini@gmail.com'>damiano.fantini@gmail.com</a>

get_gene_identifiers: Retrieve All Gene Identifiers

Description

Usage

Value

Arguments

Author

References

Examples