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TDARACNE (version 1.22.0)

Network reverse engineering from time course data.

Description

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

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Version

Version

1.22.0

License

GPL-2

Maintainer

Zoppoli Pietro

Last Published

February 15th, 2017

Functions in TDARACNE (1.22.0)

MItimeIcE2

MItimeIcE2
threshYeast

threshYeast
dataIRMAon

dataIRMAon
TDARACNEdataPublished

TDARACNEdataPublished
dataSOSmean

dataSOSmean
dataIRMAoff

dataIRMAoff
plotRgraphviz

plotRgraphviz
PercentileC

PercentileC
saveTime

saveTime
threshIRMAon

threshIRMAon
RangeRank2

RangeRank2
TDARACNE

TDARACNE
MItimeThreshperm2

MItimeThreshperm2
DPI_TDAracne

DPI_TDAracne
ToTheGraph_timeShiftmax2

ToTheGraph_timeShiftmax2
threshSOSmean

threshSOSmean
CalcMI_time2

CalcMI_time2
IcEfx

IcEfx
dataYeast

dataYeast
bootstrap

bootstrap
DPI2_TDAracne

DPI2_TDAracne