print.TEfit

print.TEfit2

Provides functions to estimate the insertion and deletion rates of transposable element (TE) families. The estimation of insertion rate consists of an improved estimate of the age distribution that takes into account random mutations, and an adjustment by the deletion rate. A hypothesis test for a uniform insertion rate is also implemented. This package implements the methods proposed in Dai et al (2018).

Xiongtao Dai

Insertion/Deletion Dynamics for Transposable Elements

Hao Wang

Jan Dvorak

Jeffrey Bennetzen

Hans-Georg Mueller

print.TEfit function

Print a TEfit or TEfit2 object — print.TEfit

Print a TEfit or TEfit2 object

print.TEfit: Print a TEfit or TEfit2 object

Description

Usage

Arguments