IUPAC2Matrix


  Convert a IUPAC string into a Postion Weight Matirx


TFBSTools is a package for the analysis and manipulation of
transcription factor binding sites. It includes matrices conversion
between Position Frequency Matirx (PFM),
Position Weight Matirx (PWM) and Information Content Matrix (ICM).
It can also scan putative TFBS from sequence/alignment,
query JASPAR database and provides a wrapper of
de novo motif discovery software.

Ge Tan

TFBSTools

Software Package for Transcription Factor Binding Site (TFBS) Analysis

IUPAC2Matrix function

Convert a IUPAC string into a Postion Weight Matirx

IUPAC2Matrix: IUPAC2Matrix

Description

Usage

Arguments

Value

Details

Examples