TFBSTools (version 1.10.3)

deleteMatrixHavingID: JASPAR database operations

Description

The functions to initialize, store matrix or delete matrix in JASPAR database.

Usage

"deleteMatrixHavingID"(x, IDs) "deleteMatrixHavingID"(x, IDs) "deleteMatrixHavingID"(x, IDs) "storeMatrix"(x, pfmList) "storeMatrix"(x, pfmList) "storeMatrix"(x, pfmList) "storeMatrix"(x, pfmList) "storeMatrix"(x, pfmList) "storeMatrix"(x, pfmList) "initializeJASPARDB"(x, version=c("2014", "2016")) "initializeJASPARDB"(x, version=c("2014", "2016")) "initializeJASPARDB"(x, version) "initializeJASPARDB"(x, version)

Arguments

x

A character vector of length 1 for the path of JASPAR SQLite file, or a SQLiteConnection object.

IDs

JASPAR stable IDs.

pfmList

The PFMatrixList object, or pfm object.

version

Which version of JASPAR to create. So far, it supports 2014 and 2016.

Value

If the operation works, a "success" will be returned.

Examples

  initializeJASPARDB("jaspar.sqlite", version="2014")
  data("MA0043")
  storeMatrix("jaspar.sqlite", MA0043)
  deleteMatrixHavingID("jaspar.sqlite","MA0043.1")
  file.remove("jaspar.sqlite")